I have that happen.
I formatted the device Before any process,and flash it again With the new EMMC
I will try tomorrow attachment
i made this and got it work again
If u had alpha 1 installed to /home/nitdroid follow theses steps:
(Note only use this if alpha1 was installed to /home/nitdroid not for /home installation)
1. Use sillyboot_2 and new installation method .
2. Install Alpha_1 to into /home/nitdroid. Boot it, ensure all is working again.
like this . devel-su
tar xjvf /home/user/MyDocs/nitdroid_n9_ics_alpha1.tar.bz2 -C /home/nitdroid
3. (If you didn't apply alpha_1 charging fix before) Remove symlink /home/nitdroid/mnt/initfs
4. Install Alpha_2 just over alpha_2, overwrite old files.
tar xjvf /home/user/MyDocs/nitdroid_n9_ics_alpha2.tar.bz2 -C /home/nitdroid/
If u have nitdroid installed to /home then move all nitdroid files to new folder /home/nitdroid
Try to reboot and if all is working install alpha 2 to /home/nitdroid